Last updated: 2018-05-15

workflowr checks: (Click a bullet for more information)

• ✔ R Markdown file: up-to-date

  Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

• ✔ Repository version: 388e65e

  Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility. The version displayed above was the version of the Git repository at the time these results were generated.
  
  Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:

  
  Ignored files:
      Ignored:    .DS_Store
      Ignored:    .Rhistory
      Ignored:    .Rproj.user/
      Ignored:    analysis/.DS_Store
      Ignored:    analysis/BH_robustness_cache/
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      Ignored:    analysis/Rmosek_cache/
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      Ignored:    analysis/alternative2_cache/
      Ignored:    analysis/alternative_cache/
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      Ignored:    analysis/average_cor_gtex_2_cache/
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      Ignored:    analysis/cash_deconv_cache/
      Ignored:    analysis/cash_fdr_1_cache/
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      Ignored:    analysis/cash_fdr_3_cache/
      Ignored:    analysis/cash_fdr_4_cache/
      Ignored:    analysis/cash_fdr_5_cache/
      Ignored:    analysis/cash_fdr_6_cache/
      Ignored:    analysis/cash_plots_cache/
      Ignored:    analysis/cash_sim_1_cache/
      Ignored:    analysis/cash_sim_2_cache/
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      Ignored:    analysis/cash_sim_4_cache/
      Ignored:    analysis/cash_sim_5_cache/
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      Ignored:    analysis/correlated_z_2_cache/
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      Ignored:    analysis/create_null_cache/
      Ignored:    analysis/cutoff_null_cache/
      Ignored:    analysis/design_matrix_2_cache/
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      Ignored:    analysis/diagnostic_correlated_z_2_cache/
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      Ignored:    analysis/diagnostic_correlated_z_cache/
      Ignored:    analysis/diagnostic_plot_2_cache/
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      Ignored:    analysis/gd-ash_cache/
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      Ignored:    analysis/gd_lik_2_cache/
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      Ignored:    analysis/gd_w_cache/
      Ignored:    analysis/knockoff_10_cache/
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      Ignored:    analysis/plot_diagnostic_cache/
      Ignored:    analysis/poster_obayes17_cache/
      Ignored:    analysis/real_data_simulation_2_cache/
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      Ignored:    analysis/real_data_simulation_5_cache/
      Ignored:    analysis/real_data_simulation_cache/
      Ignored:    analysis/rmosek_primal_dual_2_cache/
      Ignored:    analysis/rmosek_primal_dual_cache/
      Ignored:    analysis/seqgendiff_cache/
      Ignored:    analysis/simulated_correlated_null_2_cache/
      Ignored:    analysis/simulated_correlated_null_3_cache/
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      Ignored:    analysis/simulation_real_se_2_cache/
      Ignored:    analysis/simulation_real_se_cache/
      Ignored:    analysis/smemo_2_cache/
      Ignored:    data/LSI/
      Ignored:    docs/.DS_Store
      Ignored:    docs/figure/.DS_Store
      Ignored:    output/fig/
  
  

  Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

Expand here to see past versions:

File	Version	Author	Date	Message
html	e05bc83	LSun	2018-05-12	Update to 1.0
Rmd	cc0ab83	Lei Sun	2018-05-11	update
html	0f36d99	LSun	2017-12-21	Build site.
html	853a484	LSun	2017-11-07	Build site.
Rmd	3f9fa91	LSun	2017-02-27	license
html	3f9fa91	LSun	2017-02-27	license
Rmd	f04a54b	LSun	2017-02-23	license
html	f04a54b	LSun	2017-02-23	license
html	d575294	LSun	2017-01-31	Build site.
Rmd	1d187aa	LSun	2017-01-29	First Commit
html	1d187aa	LSun	2017-01-29	First Commit

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The code is available under the MIT license. The text and data are availabe under the CC-BY license. See the file LICENSE for full details.

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This reproducible R Markdown analysis was created with workflowr 1.0.1

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