Implementation by Rmosek: Simulated Non-Null

Last updated: 2018-05-15

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z <- read.table("../output/z_null_liver_777.txt")
n = ncol(z)

sel <- c(32, 327, 355, 483, 778)
ord <- c(4, 9, 9, 4, 4)
sel.num = length(sel)

beta <- c(
  rep(0, 6000),
  rnorm(3000, 0, 2),
  rnorm(1000, 0, 4)
)
beta <- sample(beta)
sebetahat <- rep(1, 1e4)
betahat.mat <- matrix(0, nrow = sel.num, ncol = n)
for (i in 1 : sel.num) {
  betahat.mat[i, ] = beta + sebetahat * as.numeric(z[sel[i], ])
}

source("../code/gdash.R")

sessionInfo()

R version 3.4.3 (2017-11-30)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS High Sierra 10.13.4

Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRlapack.dylib

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
 [1] Rcpp_0.12.16      knitr_1.20        whisker_0.3-2    
 [4] magrittr_1.5      workflowr_1.0.1   MASS_7.3-47      
 [7] pscl_1.5.2        doParallel_1.0.11 SQUAREM_2017.10-1
[10] lattice_0.20-35   foreach_1.4.4     ashr_2.2-2       
[13] stringr_1.3.0     tools_3.4.3       parallel_3.4.3   
[16] grid_3.4.3        R.oo_1.21.0       git2r_0.21.0     
[19] htmltools_0.3.6   iterators_1.0.9   yaml_2.1.18      
[22] rprojroot_1.3-2   digest_0.6.15     Matrix_1.2-12    
[25] codetools_0.2-15  R.utils_2.6.0     evaluate_0.10.1  
[28] rmarkdown_1.9     stringi_1.1.6     compiler_3.4.3   
[31] backports_1.1.2   R.methodsS3_1.7.1 truncnorm_1.0-7  

This reproducible R Markdown analysis was created with workflowr 1.0.1