Last updated: 2018-05-15
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Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.
File | Version | Author | Date | Message |
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html | e05bc83 | LSun | 2018-05-12 | Update to 1.0 |
rmd | cc0ab83 | Lei Sun | 2018-05-11 | update |
html | 0f36d99 | LSun | 2017-12-21 | Build site. |
html | 6c9268e | LSun | 2017-11-22 | Build site. |
html | 86412b5 | LSun | 2017-11-21 | Build site. |
rmd | beffb01 | LSun | 2017-11-21 | wflow_publish(c(“analysis/cash_sim_5.rmd”, “analysis/cash_sim_6.rmd”)) |
We are using the data obtained from the large-scale simulation with real data to show the variability of the positive false discovery proportions obtained by different methods at nominal q value $ = 0.05$. The true effect distribution is 0.6δ0+0.3N(0,1)+0.1N(0,22).
z.mat <- readRDS("../output/z_null_liver_777.rds")
se.mat <- readRDS("../output/sebetahat_null_liver_777.rds")
beta.list <- readRDS("../output/beta.list.rds")
qvalue.list <- readRDS("../output/qvalue.list.rds")
qvalue.BH <- qvalue.list$qvalue.BH
qvalue.qvalue <- qvalue.list$qvalue.qvalue
qvalue.locfdr <- qvalue.list$qvalue.locfdr
qvalue.ash <- qvalue.list$qvalue.ash
qvalue.gdash <- qvalue.list$qvalue.gdash
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sessionInfo()
R version 3.4.3 (2017-11-30)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS High Sierra 10.13.4
Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] vioplot_0.2 sm_2.2-5.4
loaded via a namespace (and not attached):
[1] workflowr_1.0.1 Rcpp_0.12.16 digest_0.6.15
[4] rprojroot_1.3-2 R.methodsS3_1.7.1 backports_1.1.2
[7] git2r_0.21.0 magrittr_1.5 evaluate_0.10.1
[10] stringi_1.1.6 whisker_0.3-2 R.oo_1.21.0
[13] R.utils_2.6.0 rmarkdown_1.9 tools_3.4.3
[16] stringr_1.3.0 yaml_2.1.18 compiler_3.4.3
[19] htmltools_0.3.6 knitr_1.20
This reproducible R Markdown analysis was created with workflowr 1.0.1